Bio::Phylo::Matrices::Datatype::Restriction - Validator subclass,

NAME

Bio::Phylo::Matrices::Datatype::Restriction - Validator subclass, no serviceable parts inside

DESCRIPTION

The Bio::Phylo::Matrices::Datatype::* classes are used to validate data contained by the Bio::Phylo::Matrices::Matrix manpage and the Bio::Phylo::Matrices::Datum manpage objects.

METHODS

get_ids_for_special_symbols()

Gets state-to-id mapping for missing and gap symbols

 Type    : Accessor
 Title   : get_ids_for_special_symbols
 Usage   : my %ids = %{ $obj->get_ids_for_special_symbols };
 Function: Returns state-to-id mapping
 Returns : An empty hash reference
 Args    : None
 Notes   : This method is here as an override
           because restriction site data has
           no missing or gap symbols, just
           presence/absence

SEE ALSO

the Bio::Phylo::Matrices::Datatype manpage

This class subclasses the Bio::Phylo::Matrices::Datatype manpage.

the Bio::Phylo::Manual manpage

Also see the manual: the Bio::Phylo::Manual manpage and http://rutgervos.blogspot.com.

REVISION

 $Id: Restriction.pm 867 2009-03-06 06:28:54Z rvos $
 Bio::Phylo::Matrices::Datatype::Restriction - Validator subclass,