Bio::Phylo::Matrices::Datatype::Continuous - Validator subclass,

NAME

Bio::Phylo::Matrices::Datatype::Continuous - Validator subclass, no serviceable parts inside

DESCRIPTION

The Bio::Phylo::Matrices::Datatype::* classes are used to validated data contained by the Bio::Phylo::Matrices::Matrix manpage and the Bio::Phylo::Matrices::Datum manpage objects.

METHODS

MUTATORS

set_lookup()

Sets the lookup table (no-op for continuous data!).

 Type    : Mutator
 Title   : set_lookup
 Usage   : $obj->set_gap($hashref);
 Function: Sets the symbol for gaps
 Returns : Modified object.
 Args    : Argument must be a hash
           reference that maps allowed
           single character symbols
           (including ambiguity symbols)
           onto the equivalent set of
           non-ambiguous symbols

ACCESSORS

get_lookup()

Gets the lookup table (no-op for continuous data!).

 Type    : Accessor
 Title   : get_lookup
 Usage   : my $lookup = $obj->get_lookup;
 Function: Returns the object's lookup hash
 Returns : A hash reference
 Args    : None

TESTS

is_valid()

Validates arguments for data validity.

 Type    : Test
 Title   : is_valid
 Usage   : if ( $obj->is_valid($datum) ) {
              # do something
           }
 Function: Returns true if $datum only contains valid characters
 Returns : BOOLEAN
 Args    : A list of Bio::Phylo::Matrices::Datum object, and/or
           character array references, and/or character strings,
           and/or single characters

UTILITY METHODS

split()

Splits string of characters on whitespaces.

 Type    : Utility method
 Title   : split
 Usage   : $obj->split($string)
 Function: Splits $string into characters
 Returns : An array reference of characters
 Args    : A string
join()

Joins array ref of characters to a space-separated string.

 Type    : Utility method
 Title   : join
 Usage   : $obj->join($arrayref)
 Function: Joins $arrayref into a string
 Returns : A string
 Args    : An array reference

SEE ALSO

the Bio::Phylo::Matrices::Datatype manpage

This object inherits from the Bio::Phylo::Matrices::Datatype manpage, so the methods defined therein are also applicable to the Bio::Phylo::Matrices::Datatype::Continuous manpage objects.

the Bio::Phylo::Manual manpage

Also see the manual: the Bio::Phylo::Manual manpage and http://rutgervos.blogspot.com.

REVISION

 $Id: Continuous.pm 844 2009-03-05 00:07:26Z rvos $
 Bio::Phylo::Matrices::Datatype::Continuous - Validator subclass,