Bio::Graphics::Glyph::heat_map_ideogram - The "heat_map_ideogram" glyph

- NAME
- SYNOPSIS
- DESCRIPTION

- OPTIONS

- BUGS
- SEE ALSO
- AUTHOR

# NAME

Bio::Graphics::Glyph::heat_map_ideogram - The "heat_map_ideogram" glyph

# SYNOPSIS

      See L<Bio::Graphics::Panel> and L<Bio::Graphics::Glyph>.

# DESCRIPTION

This glyph draws a chromosome ideogram using scored features instead of cytobands. It is a hybrid of the heat_map and ideograms glyphs and accepts options for both. A typical usage would be to pair this glyph with an aggregator that groups scored features such as blast hits or gene_density bins, etc with a centromere. The result is a chromosome ideogram that has bands whose colors vary porportionate to the feature score.

## OPTIONS

See the Bio::Graphics::Glyph manpage for a full explanation of standard options.

See the Bio::Graphics::Glyph::heat_map manpage for an explanation of heat_map options.

See the Bio::Graphics::Glyph::ideogram manpage for an explanation of ideogram options.

# BUGS

Please report them.

# SEE ALSO

the Bio::Graphics::Panel manpage, the Bio::Graphics::Glyph manpage, the Bio::DB::GFF manpage, the Bio::SeqI manpage, the Bio::SeqFeatureI manpage, the Bio::Das manpage, GD

# AUTHOR

Sheldon McKay <mckays@cshl.edu>

Copyright (c) 2006 Cold Spring Harbor Laboratory

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for disclaimers of warranty.

Bio::Graphics::Glyph::heat_map_ideogram - The "heat_map_ideogram" glyph