| Bio::Graphics::Glyph::arrow - the "arrow" glyph |
Bio::Graphics::Glyph::arrow - the "arrow" glyph
See L<Bio::Graphics::Panel> and L<Bio::Graphics::Glyph>.
This glyph draws arrows. Depending on options, the arrows can be labeled, be oriented vertically or horizontally, or can contain major and minor ticks suitable for use as a scale.
The following options are standard among all Glyphs. See the Bio::Graphics::Glyph manpage for a full explanation.
Option Description Default ------ ----------- -------
-fgcolor Foreground color black
-outlinecolor Synonym for -fgcolor
-bgcolor Background color turquoise
-fillcolor Synonym for -bgcolor
-linewidth Line width 1
-height Height of glyph 10
-font Glyph font gdSmallFont
-connector Connector type 0 (false)
-connector_color
Connector color black
-label Whether to draw a label 0 (false)
-description Whether to draw a description 0 (false)
-hilite Highlight color undef (no color)
In addition to the common options, the following glyph-specific options are recognized:
Option Description Default ------ ----------- -------
-tick Whether to draw major 0
and minor ticks.
0 = no ticks
1 = major ticks
2 = minor ticks
-tickcolor Color to use for tick marks fgcolor
-tickwidth Line width to use for ticks linewidth
-parallel Whether to draw the arrow 1 (true)
parallel to the sequence
or perpendicular to it.
-northeast Force a north or east 1 (true)
arrowhead(depending
on orientation)
-east synonym of above
-southwest Force a south or west 1 (true)
arrowhead(depending
on orientation)
-west synonym of above
-double force-doubleheaded arrow 0 (false)
-base Draw a vertical base at the 0 (false)
non-arrowhead side
-scale Reset the labels on the arrow 0 (false)
to reflect an externally
established scale.
-arrowstyle "regular" to create a simple regular
arrowhead. "filled" to create
a thick filled arrowhead
-relative_coords
use relative coordinates 0 (false)
for scale
-relative_coords_offset
set the relative offset 1
for scale
-label_intervals 0 (false)
Put the numeric labels on the
intervals between the ticks
rather than on the ticks
themselves.
-units add units to the tick labels none
e.g. bp
-unit_divider 1
divide tick labels by the
indicated amount prior to
displaying (use, for example
if you want to display in
cR units)
Set -parallel to 0 (false) to display a point-like feature such as a polymorphism, or to indicate an important location. If the feature start == end, then the glyph will draw a single arrow at the designated location:
^
|
Otherwise, there will be two arrows at the start and end:
^ ^
| |
Scale: Pass in a externally established scale to reset the labels on the arrow. This is particularly useful for manually constructed images where the founding parameters of the panel are not 1-based. For example, a genetic map interval ranging from 0.1 - 0.3 can be constructed by first multiplying every value by 100. Passing
arrow(-scale=>100);
will draw tick marks labelled appropriately to your external scale.
Please report them.
the Bio::Graphics::Panel manpage, the Bio::Graphics::Glyph manpage, the Bio::Graphics::Glyph::arrow manpage, the Bio::Graphics::Glyph::cds manpage, the Bio::Graphics::Glyph::crossbox manpage, the Bio::Graphics::Glyph::diamond manpage, the Bio::Graphics::Glyph::dna manpage, the Bio::Graphics::Glyph::dot manpage, the Bio::Graphics::Glyph::ellipse manpage, the Bio::Graphics::Glyph::extending_arrow manpage, the Bio::Graphics::Glyph::generic manpage, the Bio::Graphics::Glyph::graded_segments manpage, the Bio::Graphics::Glyph::heterogeneous_segments manpage, the Bio::Graphics::Glyph::line manpage, the Bio::Graphics::Glyph::pinsertion manpage, the Bio::Graphics::Glyph::primers manpage, the Bio::Graphics::Glyph::rndrect manpage, the Bio::Graphics::Glyph::segments manpage, the Bio::Graphics::Glyph::ruler_arrow manpage, the Bio::Graphics::Glyph::toomany manpage, the Bio::Graphics::Glyph::transcript manpage, the Bio::Graphics::Glyph::transcript2 manpage, the Bio::Graphics::Glyph::translation manpage, the Bio::Graphics::Glyph::triangle manpage, the Bio::DB::GFF manpage, the Bio::SeqI manpage, the Bio::SeqFeatureI manpage, the Bio::Das manpage, GD
Lincoln Stein <lstein@cshl.org>.
Copyright (c) 2001 Cold Spring Harbor Laboratory
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for disclaimers of warranty.
| Bio::Graphics::Glyph::arrow - the "arrow" glyph |