Bio::Chado::Schema::Sequence::FeatureCvterm

NAME

Bio::Chado::Schema::Sequence::FeatureCvterm

DESCRIPTION

Associate a term from a cv with a feature, for example, GO annotation.

NAME

Bio::Chado::Schema::Sequence::FeatureCvterm

ACCESSORS

feature_cvterm_id

  data_type: 'integer'
  is_auto_increment: 1
  is_nullable: 0
  sequence: 'feature_cvterm_feature_cvterm_id_seq'

feature_id

  data_type: 'integer'
  is_foreign_key: 1
  is_nullable: 0

cvterm_id

  data_type: 'integer'
  is_foreign_key: 1
  is_nullable: 0

pub_id

  data_type: 'integer'
  is_foreign_key: 1
  is_nullable: 0

Provenance for the annotation. Each annotation should have a single primary publication (which may be of the appropriate type for computational analyses) where more details can be found. Additional provenance dbxrefs can be attached using feature_cvterm_dbxref.

is_not

  data_type: 'boolean'
  default_value: false
  is_nullable: 0

If this is set to true, then this annotation is interpreted as a NEGATIVE annotation - i.e. the feature does NOT have the specified function, process, component, part, etc. See GO docs for more details.

rank

  data_type: 'integer'
  default_value: 0
  is_nullable: 0

RELATIONS

feature

Type: belongs_to

Related object: the Bio::Chado::Schema::Sequence::Feature manpage

pub

Type: belongs_to

Related object: the Bio::Chado::Schema::Pub::Pub manpage

cvterm

Type: belongs_to

Related object: the Bio::Chado::Schema::Cv::Cvterm manpage

feature_cvterm_dbxrefs

Type: has_many

Related object: the Bio::Chado::Schema::Sequence::FeatureCvtermDbxref manpage

feature_cvtermprops

Type: has_many

Related object: the Bio::Chado::Schema::Sequence::FeatureCvtermprop manpage

feature_cvterm_pubs

Type: has_many

Related object: the Bio::Chado::Schema::Sequence::FeatureCvtermPub manpage

AUTHOR

Robert Buels <rbuels@cpan.org>

COPYRIGHT AND LICENSE

This software is copyright (c) 2009 by Robert Buels.

This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.

 Bio::Chado::Schema::Sequence::FeatureCvterm