Bio::Chado::Schema::Phenotype::Phenotype

NAME

Bio::Chado::Schema::Phenotype::Phenotype

DESCRIPTION

A phenotypic statement, or a single atomic phenotypic observation, is a controlled sentence describing observable effects of non-wild type function. E.g. Obs=eye, attribute=color, cvalue=red.

NAME

Bio::Chado::Schema::Phenotype::Phenotype

ACCESSORS

phenotype_id

  data_type: 'integer'
  is_auto_increment: 1
  is_nullable: 0
  sequence: 'phenotype_phenotype_id_seq'

uniquename

  data_type: 'text'
  is_nullable: 0

observable_id

  data_type: 'integer'
  is_foreign_key: 1
  is_nullable: 1

The entity: e.g. anatomy_part, biological_process.

attr_id

  data_type: 'integer'
  is_foreign_key: 1
  is_nullable: 1

Phenotypic attribute (quality, property, attribute, character) - drawn from PATO.

value

  data_type: 'text'
  is_nullable: 1

Value of attribute - unconstrained free text. Used only if cvalue_id is not appropriate.

cvalue_id

  data_type: 'integer'
  is_foreign_key: 1
  is_nullable: 1

Phenotype attribute value (state).

assay_id

  data_type: 'integer'
  is_foreign_key: 1
  is_nullable: 1

Evidence type.

RELATIONS

feature_phenotypes

Type: has_many

Related object: the Bio::Chado::Schema::Phenotype::FeaturePhenotype manpage

nd_experiment_phenotypes

Type: has_many

Related object: the Bio::Chado::Schema::NaturalDiversity::NdExperimentPhenotype manpage

assay

Type: belongs_to

Related object: the Bio::Chado::Schema::Cv::Cvterm manpage

attr

Type: belongs_to

Related object: the Bio::Chado::Schema::Cv::Cvterm manpage

observable

Type: belongs_to

Related object: the Bio::Chado::Schema::Cv::Cvterm manpage

cvalue

Type: belongs_to

Related object: the Bio::Chado::Schema::Cv::Cvterm manpage

phenotype_comparison_phenotype1s

Type: has_many

Related object: the Bio::Chado::Schema::Genetic::PhenotypeComparison manpage

phenotype_comparison_phenotype2s

Type: has_many

Related object: the Bio::Chado::Schema::Genetic::PhenotypeComparison manpage

phenotype_cvterms

Type: has_many

Related object: the Bio::Chado::Schema::Phenotype::PhenotypeCvterm manpage

phenstatements

Type: has_many

Related object: the Bio::Chado::Schema::Genetic::Phenstatement manpage

AUTHOR

Robert Buels <rbuels@cpan.org>

COPYRIGHT AND LICENSE

This software is copyright (c) 2009 by Robert Buels.

This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.

 Bio::Chado::Schema::Phenotype::Phenotype